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SQF Certification for Bakery & Snack Food Manufacturers

Bakeries and snack food plants are certified to the GFSI-recognized SQF Food Safety Code: Food Manufacturing under Food Sector Category (FSC) 13, Bakery and Snack Food Processing, which covers bread, cakes, cookies, pies, baking mixes and all varieties of snack food. Kiwa ASI (ASI Food Safety, LLC) is licensed by the Safe Quality Food Institute (SQFI) and accredited by the ANSI National Accreditation Board (ANAB) to ISO/IEC 17065, the international standard for certification bodies, for the SQF Edition 9 Food Manufacturing code. We audit first-time sites and accept transfers from other certification bodies.

  • SQF FSC 13: Bakery & Snack Food Processing
  • Food Manufacturing Code · Module 11
  • SQFI-Licensed CB
  • Transfers Welcome

Last updated October 2, 2026

Get a Bakery or Snack SQF Quote

Tell us your products and current certification body (if any). An SQF specialist will check whether we can audit your scope and, if so, confirm pricing.

What Is SQF Certification for Bakery and Snack Foods?

SQF certification for bakery and snack foods is GFSI-recognized certification to the SQF Food Safety Code: Food Manufacturing under Food Sector Category 13, Bakery and Snack Food Processing. SQF (Safe Quality Food) is run by the Safe Quality Food Institute (SQFI), a division of FMI. The code pairs a HACCP (Hazard Analysis and Critical Control Point) food safety plan with Module 11, Good Manufacturing Practices for Processing of Food Products, and makes allergen management a mandatory element. SQF isn't required by law, but a retailer, foodservice company or brand owner may ask its bakery and snack suppliers for GFSI-recognized certification.

SQF works alongside FDA rules and doesn't replace them. Most bakeries and snack plants that must register with FDA also need a written food safety plan under the Preventive Controls for Human Food rule (21 CFR Part 117), prepared or overseen by a preventive controls qualified individual (PCQI); very small businesses (qualified facilities) follow modified requirements instead. Labels must meet allergen labeling law. For the full program, see our main SQF certification page.

Edition 9 now, Edition 10 no earlier than 2027.

SQF audits currently use Edition 9. SQFI published Edition 10 in early 2026. Edition 10 audits will start no earlier than January 2, 2027, depending on GFSI benchmarking, and GFSI opened its public consultation on Edition 10 on September 29, 2026. Bakery and snack sites stay in FSC 13. SQFI's Edition 10 description adds waffles, pancakes, crackers and all forms of granola, and describes FSC 13 bakery operations as products "stored and sold at ambient temperature," so confirm the category for refrigerated or frozen bakery items with your certification body. Kiwa ASI's ANAB accreditation currently covers specific SQF Edition 9 codes.

  • One Category for Bakery and Snacks

    FSC 13 covers bread, cakes, cookies, pies, baking mixes, extruded snacks and all varieties of snack food under the Food Manufacturing code.

  • Allergen Management Is Mandatory

    Clause 2.8.1 requires an allergen risk analysis, segregation, validated changeover cleaning, label accuracy controls and allergen rework that is clearly identified and traceable.

  • Works With FDA Preventive Controls

    Your SQF food safety plan must meet the food law that applies to you, such as FDA's preventive controls and allergen labeling rules.

  • Fewer Customer Audits

    Where your buyers accept GFSI-recognized certification, an SQF certificate can reduce the number of separate customer audits you host.

Which SQF Code and Category (FSC 13) Applies to Bakery and Snack Foods?

Bakery and snack food plants use the SQF Food Safety Code: Food Manufacturing. SQFI's FSC 13 "applies to the processing, packaging, and on-site storage of extruded snack foods and cake mix formulations and extends to all bakery operations," including "meat pies, custard pies, bread, cookies, cakes, and mixes and all varieties of snack food." Every category below uses the Food Manufacturing code (Module 11) except FSC 26, which uses the Storage and Distribution code (Module 12), and FSC 27, which uses the Manufacture of Food Packaging code (Module 13). Find your operation below.

Which SQF Food Sector Category covers your bakery or snack food operation?
Your operationSQF Food Sector Category (Edition 9 names)
Bread, rolls, buns and other baked goodsFSC 13: Bakery and Snack Food Processing
Cookies, cakes, pastries and pies (SQFI's examples include meat pies and custard pies)FSC 13: Bakery and Snack Food Processing
Cake and baking mixesFSC 13: covers "cake mix formulations"
Chips, extruded snacks and other snack foodsFSC 13: covers "all varieties of snack food"
Crackers, waffles, pancakes and granolaFSC 13 under Edition 10, which names them. Under Edition 9, your certification body confirms the category (frozen waffles or pancakes may fall outside Edition 10's ambient description)
Frozen pizza, sandwiches and other recipe mealsFSC 20: Recipe Meals Manufacturing lists pizza and sandwiches; your certification body confirms the category
Chocolate, candy and other confectioneryFSC 17: Confectionery Manufacturing
Flour milling, breakfast cereals and pastaFSC 22: Processing of Cereal Grains
Nut roasting and nut processingFSC 14: Fruit, Vegetable, and Nut Processing, and Fruit Juices
Peanut butter and other nut buttersFSC 18: Preserved Foods Manufacturing (Edition 10 lists nut butter under both FSC 14 and FSC 18)
Baking cultures, yeast and other dry food ingredients (cake and baking mixes stay in FSC 13)FSC 19: Food Ingredient Manufacturing
Gift packs, variety packs or baskets assembled from snacks or nuts made elsewhereFSC 25: Repackaging of Product Not Manufactured On-site
Stand-alone or off-site ingredient and finished-goods warehouses (storage at your plant is part of your FSC 13 scope)FSC 26: Storage and Distribution
Bags, films, cartons and other packagingFSC 27: Manufacture of Food Packaging

Not sure where you fit? SQF certification is product-specific, so your certificate lists the products in scope, and a site that makes products in more than one category can be certified for each of them. SQFI's category list doesn't name some products, such as tortillas, pretzels or frozen dough, and it doesn't say where chocolate-coated baked goods go, so your certification body confirms the category when it sets your audit scope. Category names are from Edition 9; Edition 10 renames some, for example FSC 17 Confectionary and Candy Manufacturing, FSC 19 Food Additive Manufacturing and FSC 22 Processing of Grains and Flours. Source: SQFI Food Sector Categories.

Other GFSI-recognized programs: SQF isn't the only option, and each customer decides which programs it accepts. For bakery and snack food processing (GFSI scope CIV, processing of ambient-stable products), GFSI recognizes BRCGS Food Safety, FSSC 22000, IFS Food and SQF, among others, listed here A to Z. SQF is more common in the U.S. BRCGS Food Safety, FSSC 22000 (Version 6) and IFS Food certificates are issued by Kiwa group certification bodies, not by Kiwa ASI; ask us, and we'll check auditor coverage for your products before quoting. Each program's own scope rules decide whether your products are covered. See GFSI certification for how the programs compare.

Who Needs SQF Bakery and Snack Food Certification?

Any bakery or snack food business whose customers ask for GFSI-recognized certification. Sites that use the SQF Food Manufacturing code under FSC 13 include:

  • Wholesale and Commercial Bakeries

    FSC 13

    Bread, rolls, buns and other baked goods made for retail, foodservice and private label customers.

  • Cookie and Cracker Plants

    FSC 13

    Sheeted, wire-cut and rotary-moulded products, where shared lines mean allergen changeovers.

  • Cake, Pie and Pastry Makers

    FSC 13

    Layer cakes, muffins, pies and pastries, including filled and iced products handled after baking.

  • Snack Food Manufacturers

    FSC 13

    Chips, extruded and puffed snacks and other snack foods, including those seasoned after cooking.

  • Baking Mix Producers

    FSC 13

    Cake, bread and pancake mixes that blend flour, sugar, dried egg or milk and leavening.

  • Co-Packers and Private Label

    FSC 13

    Contract bakers and snack makers that need one certificate to cover several brands.

  • Sites Changing Certification Body

    Certification body transfers

    SQF-certified bakery and snack plants that want a different certification body at their next recertification.

  • First-Time SQF Sites

    New to SQF

    Plants moving from customer audits or FDA-only programs to a GFSI-recognized scheme.

Which Bakery and Snack Food Hazards Does an SQF Audit Focus On?

An SQF bakery or snack audit checks how your food safety plan controls hazards such as these eight: undeclared allergens and allergen cross-contact, pathogens such as Salmonella in low-moisture ingredients, contamination after baking, under-baking and perishable fillings, foreign material, stored-product pests, chemical hazards, and the compressed air and gases that touch product. The table maps each hazard to the Edition 9 clause that covers it and the evidence auditors typically look for. Module 2 clauses (2.x) cover the food safety system; 11.x clauses are in Module 11.

Bakery and snack food hazards an SQF auditor will focus on (Edition 9)
HazardWhere it shows upSQF requirementWhat the auditor will ask to see
Undeclared allergens and allergen cross-contactWheat, milk, egg, soy, tree nuts, peanuts and sesame on shared mixers, ovens and packaging lines; airborne flour and powders; toppings and inclusions; rework; the wrong label or film2.8.1 Allergen Management, Mandatory (risk analysis 2.8.1.1, segregation 2.8.1.3, changeover cleaning that removes allergens "including aerosols as appropriate" 2.8.1.4, cleaning validation and verification 2.8.1.5, label accuracy 2.8.1.9, rework 2.8.1.10)Allergen risk analysis, segregation, changeover procedures and validated cleaning, label approval and reconciliation records, allergen rework identification and traceability records
Salmonella and other pathogens in low-moisture ingredientsFlour, nut butters, cocoa, dried egg and milk powders, seeds and spices, especially those added after baking or in products that aren't baked2.3.4 Approved Supplier Program; 2.4.3 Food Safety Plan; 2.4.4 Product Sampling, Inspection and AnalysisSupplier approval and certificates of analysis for higher-risk ingredients, hazard analysis that identifies which ingredients get a kill step
Contamination after baking or cookingCooling, slicing, icing, filling, enrobing, seasoning and packaging of ready-to-eat product11.7.1 High-Risk Processes, where your hazard analysis treats post-bake product as high-risk food (areas after a "kill" step protected from raw materials and the staff who handle them); 2.4.8 Environmental MonitoringSeparation of raw and post-bake areas, a risk-based environmental sampling schedule (organisms, sites, frequency), results tracked and trended
Survival of pathogens in under-baked product or growth in perishable fillingsOvens and fryers used as a control step; cream, custard and meat fillings2.4.3 Food Safety Plan (validated critical limits); 2.5.1 Validation and Effectiveness; 11.6.2 Cold Storage, Freezing, and Chilling of FoodsValidation of bake or fry time and temperature where it's a control, monitoring records, filling temperature records
Foreign materialMetal from mixers, sheeters, cutters and slicers; plastic, wood, glass; stones and other matter in flour and grain11.7.3 Control of Foreign Matter Contamination; 11.7.4 Detection of Foreign Objects (screens, sieves, filters and, where used, detectors)Sifter and sieve checks, metal detector or x-ray checks and reject records, glass inventory, equipment inspections, no snap-off blades
Stored-product insects and rodentsFlour silos, ingredient warehouses, sifters, dust in hard-to-clean areas11.2.4 Pest Prevention; 11.1.5 Dust, Insect, and Pest Proofing; 11.6.3 Storage of Dry Ingredients, Packaging, and Shelf Stable Packaged GoodsPest prevention program and site map, trend records, stock rotation, storage cleaning frequency
Chemical hazardsMycotoxins such as aflatoxin in peanuts and corn, acrylamide in fried and baked products, cleaning chemicals, food-grade lubricants2.4.3 Food Safety Plan (hazard analysis); 2.3.4 Approved Supplier Program; 11.6.4 Storage of Hazardous Chemicals and Toxic Substances; 11.2.1.7 (food-grade lubricants); 2.8.1.1 (lubricants that contain allergens)Hazard analysis covering chemical hazards, supplier specifications and certificates of analysis, chemical controls
Compressed air and gases that touch productNitrogen-flushed snack bags, air knives, pneumatic conveying of flour and sugar11.5.5 Air and Other Gases (monitored at a risk-based frequency, at least annually)Compressed air and gas testing records and filter maintenance

Why it matters: FDA lists bakery products and snack foods among the five food types most often involved in food allergen recalls, and from September 2009 to September 2014 about one-third of foods reported to FDA through the Reportable Food Registry as serious health risks involved undeclared allergens (FDA). Low-moisture foods carry Salmonella too: in the 2022 outbreak linked to Jif peanut butter, CDC reported 21 illnesses in 17 states, and the outbreak strain was closely related genetically to an environmental sample collected at the same plant in 2010 (CDC). In 2015, the former president of Peanut Corporation of America was sentenced to 28 years in prison (DOJ) after a 2008–2009 outbreak in which CDC reported 714 people infected in 46 states (CDC). Build your program with our allergen management training and environmental monitoring training.

How Does SQF Fit With FDA Rules for Bakery and Snack Foods?

SQF certification is voluntary, but it sits on top of rules that aren't. Your SQF system has to show that you comply with the food laws that apply to you, such as FDA's preventive controls rule and food labeling law. SQF auditors check that the system manages compliance. They don't inspect on behalf of FDA.

How SQF fits with U.S. rules for bakery and snack foods
RequirementWhat it coversMandatory?How it relates to SQF
FDA Preventive Controls for Human Food (21 CFR Part 117)Registered facilities need a written food safety plan, prepared or overseen by a preventive controls qualified individual (PCQI). Very small businesses (qualified facilities) follow modified requirements instead.Yes (FDA)SQF certification isn't FDA registration or an FDA food safety plan; clause 2.4.1 requires you to comply with the food law that applies to you
Food allergen preventive controls (117.135(c)(2))Procedures that protect food from allergen cross-contact during storage, handling and use, and that make sure the finished food is labeled correctly.Yes, in an FDA food safety planSupported by SQF 2.8.1 Allergen Management
Major food allergen labeling (Food Allergen Labeling and Consumer Protection Act, or FALCPA, and the FASTER Act of 2021)Nine major food allergens must be declared; sesame became the 9th on January 1, 2023.Yes (labeling law)2.8.1.7 and 2.8.1.9 require clear allergen labeling and label accuracy controls
FDA food allergen guidance, Edition 5 (January 2025)Coconut is no longer treated as a tree nut allergen (it still goes in the ingredient list). Milk from goats, sheep and other ruminants and eggs from ducks, geese, quail and other fowl are treated as major allergens.Guidance (nonbinding)Keep your allergen list (2.8.1.1) and labels current
Sanitation controls and environmental monitoring (117.130, 117.135(c)(3), 117.165)Evaluate environmental pathogens when ready-to-eat food is exposed before packaging with no later treatment or other control, and monitor the environment where that's a hazard needing a preventive control.Yes, where the hazard applies (FDA)Supported by SQF 2.4.8 Environmental Monitoring and 11.7.1 High-Risk Processes
"Gluten-free" claims (21 CFR 101.91)No gluten-containing grain ingredients unless processed to remove gluten, and any unavoidable gluten below 20 ppm. Testing isn't required, but you're responsible for meeting the rule.Only if you make the claimCovered by 2.4.1 Food Legislation. SQF doesn't certify gluten-free claims
Acrylamide and aflatoxinYour hazard analysis must cover natural toxins such as aflatoxin (117.130). FDA's 2016 acrylamide guidance sets no limit; acrylamide is on California's Proposition 65 list.Hazard analysis yes; FDA's acrylamide and aflatoxin guidance is nonbindingAddress them as chemical hazards in your hazard analysis (2.4.3) and supplier specifications (2.3.4)
FSMA 204 Food Traceability RuleCovers foods on FDA's Food Traceability List that a bakery may use, such as nut butters, shell eggs, fresh soft cheeses and fresh-cut fruit. Kill-step and same-form rules apply.Yes for listed foods; FDA won't enforce before July 20, 2028SQF 2.6 traceability and recall testing gives you a base, but the rule adds its own records

Who's covered: retail food establishments that sell mainly to consumers don't have to register with FDA. A very small business averages less than $1 million a year (adjusted for inflation; FDA's current cut-off is $1,372,952) in human food sales plus the market value of food held without sale over the prior three years; as a qualified facility, it files attestations with FDA instead of keeping a full food safety plan. Aflatoxin: FDA's Compliance Policy Guide 555.400 uses more than 20 ppb total aflatoxins as its criterion for regulatory action on human food, and excludes peanuts and peanut products, Brazil nuts and pistachios. Traceability: tree nut and peanut butters are on the Food Traceability List (soy and seed butters aren't), as are shell eggs (including products made with raw, unpasteurized eggs), fresh soft cheeses such as cream cheese and ricotta, and fresh-cut fruit. A food made with a listed food is covered only if the listed food stays in the same form, and food you put through a kill step is exempt if you keep the required receiving and kill-step records. Raw flour: CDC advises always baking or cooking food made with raw flour, like cookie dough or cake batter, before eating it; in a 2016 outbreak linked to flour, CDC reported 63 people infected with Shiga toxin-producing E. coli in 24 states (CDC). Need a PCQI? See PCQI training. Sources: 21 CFR 117.5, 117.126, 117.130, 117.135, 117.165, 117.201, 21 CFR 1.226 and 1.227, FDA inflation-adjusted cut-offs, FDA allergen labeling FAQ, FDA allergen guidance (Edition 5), 21 CFR 101.91, FDA acrylamide guidance, FDA CPG 555.400, FDA Food Traceability List, FDA Food Traceability Rule, 21 CFR 1.1305.

What Does an SQF Bakery and Snack Food Audit Cover?

An SQF audit covers the Module 2 System Elements plus Module 11, Good Manufacturing Practices for Processing of Food Products. The auditor reviews documents and records, interviews staff, runs a traceability exercise and walks the plant while production is running, from ingredient receiving and mixing to baking or cooking, cooling, packaging and storage. Part of the audit can be remote, but at least half must be on-site, and the minimum audit duration is two days. Unannounced audits are always fully on-site. Under SQF rules, the auditor must be registered with SQFI for your Food Sector Category. If not, a technical expert can assist a registered auditor, but only if your site accepts and SQFI approves it for that audit. Before we quote, Kiwa ASI checks whether it can meet that rule for each food sector category in your scope, and tells you if it can't.

Key Audit Areas (Edition 9)

Audit areaBakery and snack focus
2.1 Management CommitmentFood safety culture, primary and substitute SQF Practitioners, management review, complaint handling
2.3 Specifications, Formulations, Realization, and Supplier ApprovalFlour, nut, seed, inclusion, filling and packaging specifications; approved suppliers and their allergen status
2.4 Food Safety SystemFood law (FDA preventive controls and labeling), HACCP-based food safety plan, sampling and testing, rework, product release, environmental monitoring
2.5 SQF System VerificationValidation of bake and fry critical limits where they're controls, allergen cleaning validation, verification, corrective action, internal audits
2.6 Product Traceability and Crisis ManagementLot coding from flour and ingredient lots to finished case, mock recalls, crisis planning
2.7 Food Defense and Food FraudIngredient substitution and dilution, such as nuts, spices, vanilla and honey; site access
2.8 Allergen ManagementSegregation, changeover procedures, airborne flour and powders, label control, rework
11.2 Site OperationPest prevention for dry ingredients, cleaning and sanitation (including dry cleaning), maintenance
11.5 Water, Ice, and Air SupplyCompressed air and nitrogen that contact product
11.7 Separation of FunctionsHigh-risk post-bake areas where they apply, foreign matter control, sifters and metal detection

Scoring and Ratings (Edition 9)

Every audit starts at 100 points. Each minor non-conformance deducts 1 point, each major 5 and a critical 50.

RatingScoreOutcome
E – Excellent96–100Certified; recertification every 12 months
G – Good86–95Certified; recertification every 12 months
C – Complies70–85Certified; 6-month surveillance audit
F – Fails to Comply0–69Not certified (initial audit); suspended (surveillance or recertification audit)

Edition 10 (no earlier than 2027): SQFI labels some clauses Core Clauses. A minor finding against a Core Clause deducts 2 points and a major 7; other findings stay at 1 and 5. Ratings become Certified (80–100) or Certified with Surveillance (70–79). A score below 70 fails an initial audit. At a surveillance or recertification audit, a score below 70 suspends the site at once; SQFI calls this rating "Certified with Unannounced Surveillance": the certificate is issued only after a successful site visit, and a six-month unannounced surveillance audit follows. Corrective actions get 40 days.

Non-Conformance Categories

  • Minor−1 point

    An infrequent lapse that doesn't compromise safety, such as a missed sign-off on a cleaning record.

  • Major−5 points

    A system failure or serious deviation that shows a safety risk, such as allergen changeover cleaning that hasn't been validated on a shared line.

  • Critical−50 points

    A breakdown of control at a critical control point (CCP), prerequisite program or other process step that is likely to cause a significant public health risk and/or product contamination, or systemic falsification of food safety records. Fails an initial audit and suspends an existing certificate.

Corrective actions: close out every minor and major non-conformance, with a root cause analysis, within 30 calendar days of the audit (40 days under Edition 10). Your certification body can allow more time, such as for structural repairs or equipment lead times, when there's no immediate threat to product safety and you put temporary controls in place. At least one recertification audit every three years is unannounced.

New to SQF or Switching Certification Bodies?

New sites build an SQF system, register with SQFI and book an initial certification audit. Certified sites can move their SQF certificate to another SQFI-licensed certification body without starting over: under Edition 9 Part A (15.3) of the Food Manufacturing code, you can change after one certification cycle (the annual period between certification audits), once all non-conformances are closed, as long as the certificate isn't suspended or under threat of suspension or withdrawal. Here's how the two paths compare.

New to SQF vs. switching your SQF certification body to Kiwa ASI
TopicNew to SQFSwitching to Kiwa ASI
Starting pointBuild a HACCP-based SQF system, prerequisite programs and recordsKeep your current SQF system, certificate and Practitioners
When you can startAny time; allow time to build the system plus the 90 days of records SQFI recommends before the auditUnder Edition 9, after one certification cycle (the annual period between certification audits), with all non-conformances closed and the certificate not suspended or under threat of suspension
SQFI registrationRegister the site in the SQFI assessment database and pay the annual fee ($650 for the Food Manufacturing code, capped at $800 for two or more codes)Your site is already registered. Your certification number and recertification date move with you
What Kiwa ASI reviews firstProducts, FSC 13 scope, number of lines and HACCP plans, allergen profile, production schedule and shiftsCurrent certificate, last recertification and any surveillance reports, open non-conformances, complaints and where you are in the certification cycle
Your auditOne initial certification audit (at least two days, at least half on-site)Your next audit falls in your existing window, 30 days either side of the anniversary
Unannounced auditsUnder Edition 9, the first three-year cycle starts at your initial certification audit; under Edition 10, at your first recertification auditYour unannounced audit schedule doesn't change when you change certification bodies
Surveillance auditsOnly if you score C (70–85)If a surveillance audit is due, change after it is done (or with SQFI Compliance approval)
Your existing certificateNot applicableStays valid until its expected expiration date while your next recertification audit is completed in your normal window

Edition 10 changes the timing. Once Edition 10 applies, the one-cycle wait goes away: a site can switch once its certificate is issued and before its next audit window opens, as long as all non-conformances are closed, no surveillance audit is pending, and the certificate isn't suspended or under threat of suspension or withdrawal. The new certification body must also confirm the date of your last unannounced audit. Kiwa ASI's ANAB accreditation currently covers specific SQF Edition 9 codes, so ask about our Edition 10 status before you plan an Edition 10 transfer. Ready to switch? Request a transfer quote and include your current certificate and last audit report.

SQF Codes and Audit Checklists for Bakery and Snacks

Free SQF Edition 9 code PDFs and Excel audit checklists. Bakery and snack food plants use the Food Manufacturing code. Stand-alone warehouses use Storage and Distribution, and packaging makers use Manufacture of Food Packaging. Edition 10 codes are in the SQFI library of codes.

How Much Does SQF Bakery and Snack Food Certification Cost?

First-year SQF cost for a bakery or snack food plant can range from about $6,000 for a small, well-prepared site to $25,000 or more for a larger plant that needs outside help and facility upgrades. These are estimates only; your audit fee depends on the audit duration your certification body calculates. Several lines, allergen changeovers, multiple HACCP plans and multiple shifts all add audit time. Budget across five areas:

  • $4,500 – $9,000+

    Certification Audit Fee

    Paid to your certification body. Driven by site size, number of HACCP plans and product lines, shifts and travel.

  • $650 – $800 / year

    SQFI Site Registration

    Paid to SQFI each year: $650 for the Food Manufacturing code, capped at $800 for two or more codes.

  • $700 – $2,500+

    Training

    HACCP training from any qualifying provider for any SQF Practitioner not yet trained, plus other food safety courses for the team as needed.

  • Varies

    Consulting (Optional)

    Some sites hire an SQF consultant for gap assessments or documentation support. Consulting isn't required for certification.

  • Varies

    Facility Improvements

    Separation of post-bake areas, dust control, sifters and detection equipment, or other upgrades the audit may call for.

When you switch certification bodies, you keep your SQF system, SQFI site registration, certification number and recertification date, so there's nothing new to register with SQFI; your annual SQFI fee and audit fee still apply. Request a quote for audit pricing for your plant.

How Do Bakery and Snack Food Plants Get SQF Certified?

A first-time bakery or snack food plant goes through ten steps. Timing depends on how much of your system already exists; SQFI recommends at least 90 days of records before the certification audit. Sites already SQF certified can skip to step 6 and transfer at their next recertification.

  1. Step 1: Confirm Your FSC and Code

    Bakery and snack food processing is FSC 13 under the Food Manufacturing code, Module 11. Download the code and checklist.

  2. Step 2: Register With SQFI

    Register the site in the SQFI assessment database and pay the annual fee. You must be registered before your initial certification audit starts, and stay registered to keep your certificate valid.

  3. Step 3: Appoint SQF Practitioners

    Name a primary and a substitute Practitioner, both employed by the site, HACCP-trained and competent to maintain your food safety plans.

  4. Step 4: Build the Food Safety System

    Write your HACCP-based food safety plan, allergen management program, environmental monitoring, supplier approval, traceability, pest prevention and sanitation programs, aligned with your FDA food safety plan.

  5. Step 5: Implement and Keep Records

    Run the system and build records. SQFI recommends at least 90 days of records before the certification audit.

  6. Step 6: Choose Your Certification Body

    Choose an SQFI-licensed, accredited certification body. Kiwa ASI first checks whether it can audit your food sector categories, then confirms your audit scope, quotes, and plans announced audits for when your main processes are operating.

  7. Step 7: Internal Audit and Mock Recall

    Audit every element, run a traceability exercise from flour and ingredient lots to finished product, and hold a management review.

  8. Step 8: Complete the Certification Audit

    One audit of documents, records and the plant while it is running: at least two days, with at least half of the time on-site.

  9. Step 9: Close Out Corrective Actions

    Fix each non-conformance with a root cause analysis within 30 days (40 days under Edition 10).

  10. Step 10: Certify and Recertify Every 12 Months

    Your certificate is listed in the SQFI database. Recertify within 30 days either side of the anniversary, with an unannounced audit at least once every three years.

Optional Training From ASI Training and Consulting

Live virtual courses from ASI Training and Consulting, LLC, which operates separately from the certification body, taught by experienced food safety trainers. Taking a course is optional and has no effect on your audit outcome. Start with HACCP for your SQF Practitioners, then add allergen management, PCQI and Implementing SQF Systems for the wider team.

HACCP Training

HACCP Certification Training

Develop, implement and maintain a HACCP plan based on Codex Alimentarius principles. This general course is accredited by the International HACCP Alliance.

16 contact hours · 4 half-days · Live via Zoom · 8:30 AM–12:30 PM CT

Upcoming dates$695 per seat
Allergen Control

Allergen Management Training

Build and run an allergen management program: allergen risk assessment, cross-contact prevention, labeling and verification.

4 hours · Live virtual · Instructor-led

Upcoming dates$300 per seat

Next date to be announced. Ask about upcoming dates

FDA Preventive Controls

PCQI 2.0 Training

The FSPCA Preventive Controls for Human Food curriculum (Version 2.0) for the person who prepares or oversees your FDA food safety plan.

5 half-days · Live via Zoom · 8:30 AM–12:30 PM CT

Upcoming dates$899 per seat
SQF Edition 10

Edition 10 SQF Conversion Course

Half-day workshop for current SQF Practitioners: what changed from Edition 9 and a 30-day implementation roadmap.

4 contact hours · Half day · Live via Zoom · 8:30 AM–12:30 PM CT

Upcoming dates$325 per seat

Why Choose Kiwa ASI for Bakery and Snack Food SQF Certification?

An SQFI-licensed certification body, ANAB-accredited for the Edition 9 Food Manufacturing code, with transfers handled under SQF rules and announced audits planned for when your main lines are running.

  • Accredited

    Accredited for Specific SQF Edition 9 Codes

    ASI Food Safety, LLC is licensed by SQFI and accredited by ANAB to ISO/IEC 17065 for the SQF Food Safety Code: Food Manufacturing (Edition 9), the code that covers bakery and snack food plants. ANAB lists codes, not food sector categories, so before we quote we check whether we can meet SQF's auditor registration rule for your categories.

  • Switching

    Certification Body Transfers

    Under SQF rules, your certification number, recertification date and unannounced audit schedule carry over. We complete SQFI's required transfer review up front: your current certificate, your food sector category and scope, your last audit reports and open non-conformances, complaints, and where you are in the certification cycle.

  • Scheduling

    Audits While You're Running

    Announced audits are scheduled with you for when your main processes are operating, as SQF requires, so the auditor can see production such as mixing, baking or frying, cooling and packaging, including allergen changeovers if they fall during the audit. Kiwa ASI sets unannounced audit dates, without notice, within your 60-day recertification window (30 days either side of the anniversary). Send any blackout dates, with reasons, at least one month before that window (2.1.1.8; at least 90 days before the audit window under Edition 10).

  • Impartiality

    Training Kept Separate

    Training comes from ASI Training and Consulting, LLC, independently of the certification body. It's optional and has no effect on your audit outcome.

  • Partnership

    Global Kiwa Network

    Part of Kiwa, an international testing, inspection and certification group. Kiwa ASI audits and issues SQF certificates; it doesn't test baked goods or snacks.

Frequently Asked Questions About SQF for Bakery and Snack Foods

Which SQF code and category cover bakery and snack foods?

The SQF Food Safety Code: Food Manufacturing, under Food Sector Category (FSC) 13, Bakery and Snack Food Processing, with Module 11 Good Manufacturing Practices. FSC 13 applies to the processing, packaging and on-site storage of extruded snack foods and cake mix formulations and extends to all bakery operations; SQFI's examples include meat pies, custard pies, bread, cookies, cakes, mixes and all varieties of snack food. Edition 10 adds waffles, pancakes, crackers and all forms of granola, and describes bakery operations of products stored and sold at ambient temperature.

Which SQF category covers frozen pizza, sandwiches or nut butter?

SQFI lists pizza and sandwiches under FSC 20, Recipe Meals Manufacturing. Under Edition 9, peanut butter is listed under FSC 18, Preserved Foods Manufacturing; Edition 10 lists nut butter under both FSC 14 and FSC 18. All of these use the Food Manufacturing code, and your certification body confirms the category when it sets your audit scope.

Does SQF certification replace FDA's preventive controls rule?

No. Most bakeries and snack plants that must register with FDA also need a written food safety plan under 21 CFR Part 117, prepared or overseen by a preventive controls qualified individual (PCQI); very small businesses (qualified facilities) follow modified requirements instead. SQF certification doesn't replace those rules: the SQF code requires you to comply with the food law that applies to your products.

Do we still need a PCQI if we're SQF certified?

Yes, if your facility must have a food safety plan under FDA's Preventive Controls for Human Food rule, which covers most registered facilities except qualified facilities (very small businesses). The PCQI prepares or oversees your FDA food safety plan, while the SQF Practitioner maintains your SQF system and must be HACCP-trained and employed by the site. One person can hold both roles if they meet both sets of requirements.

How does SQF handle allergens in a bakery?

Clause 2.8.1 Allergen Management is mandatory. It requires a risk analysis of allergen-containing raw materials, ingredients and processing aids (including food-grade lubricants), segregation, changeover cleaning that removes allergens from product contact surfaces (including aerosols as appropriate), validation and verification of that cleaning, label accuracy controls, and allergen rework that is clearly identified and traceable.

Is sesame a major food allergen?

Yes. The FASTER Act of 2021 made sesame the 9th major food allergen, effective January 1, 2023. FDA noted in 2023 that some manufacturers were intentionally adding sesame to products and labeling it instead of preventing cross-contact, a result FDA said it does not support.

Is coconut still a major food allergen?

No, according to FDA's guidance. FDA's January 2025 food allergen guidance (Edition 5) removed coconut from its list of tree nuts that are major food allergens, though coconut still has to be listed in the ingredient statement. The same guidance treats milk from goats, sheep and other ruminants and eggs from ducks, geese, quail and other fowl as major food allergens.

Can a "may contain" statement replace allergen controls?

No. FDA says advisory statements such as "may contain" aren't required by law, aren't a substitute for good manufacturing practices or food allergen preventive controls, and must be truthful and not misleading. An SQF audit still checks segregation, changeover cleaning and label controls under 2.8.1.

Does SQF require metal detectors?

Not outright. Clause 11.7.4 requires documented methods for the screens, sieves, filters or other technologies you use to remove or detect foreign matter. Where you use detection systems, you must set detection limits based on a risk assessment, routinely monitor, validate and check the equipment, and keep records of checks and rejected product.

Does the FSMA 204 traceability rule apply to bakery and snack foods?

Only to foods on FDA's Food Traceability List (FTL), under section 204 of the Food Safety Modernization Act (FSMA). Listed foods a bakery may use include tree nut and peanut butters (soy and seed butters aren't listed), shell eggs (including products made with raw, unpasteurized eggs), fresh soft cheeses such as cream cheese and ricotta, and fresh-cut fruit. A food made with a listed food is covered only if that food stays in the same form, and food you put through a kill step is exempt if you keep the required records. FDA won't enforce the rule before July 20, 2028. SQF certification still requires traceability and recall testing under clause 2.6.

Is SQF certification required by law for bakeries?

No. SQF certification is voluntary. The legal requirements are FDA's food safety and labeling rules, plus state and local rules for retail bakeries. A retailer, foodservice company or brand owner may still ask its bakery and snack suppliers for GFSI-recognized certification such as SQF.

Which GFSI-recognized programs cover bakeries and snack food plants?

Several, listed here A to Z. For bakery and snack food processing (GFSI scope CIV, processing of ambient-stable products), GFSI recognizes BRCGS Food Safety, FSSC 22000, IFS Food and SQF, among others. Each customer decides which programs it accepts, and SQF is more common in the U.S. BRCGS Food Safety, FSSC 22000 (Version 6) and IFS Food certificates are issued by Kiwa group certification bodies, not by Kiwa ASI; ask us, and we'll check auditor coverage for your products before quoting. Each program's own scope rules decide whether your products are covered.

Is Kiwa ASI accredited to certify bakery and snack food plants?

Yes, for the SQF Food Safety Code: Food Manufacturing, Edition 9. ASI Food Safety, LLC (Kiwa ASI) is licensed by SQFI and accredited by ANAB (accreditation ID 1222) to ISO/IEC 17065 for that code. SQFI places FSC 13 under that code, and ANAB's listing names codes, not food sector categories. SQF rules require an auditor registered with SQFI for your food sector category, or a registered auditor assisted by an SQFI-approved technical expert. Before we quote, we check whether we can meet that rule for your categories, and we'll tell you if we can't.

How often is a bakery or snack food plant audited under SQF?

Every 12 months. Recertification audits fall within 30 days either side of the anniversary of the last day of your initial certification audit. Sites rated C – Complies (70–85) under Edition 9 also get a surveillance audit at six months, and at least one recertification audit every three years is unannounced and fully on-site.

Which SQF edition will our audit use?

Edition 9, for now. SQF audits use Edition 9 until Edition 10 audits begin, which SQFI says will be no earlier than January 2, 2027, depending on GFSI benchmarking. GFSI opened its public consultation on Edition 10 on September 29, 2026. A single audit won't mix requirements from both editions, and a surveillance audit that follows an Edition 9 audit stays on Edition 9, even if it falls after Edition 10 audits begin. Kiwa ASI's ANAB accreditation currently covers specific SQF Edition 9 codes, so ask which edition your first audit will use, and about our Edition 10 status, when you request a quote.

Can we switch our SQF certification body to Kiwa ASI?

Yes, if we can meet SQF's auditor registration rule for your food sector categories, which we check before we quote. Under Edition 9, you can change to another SQFI-licensed certification body after one certification cycle (the annual period between certification audits), once all non-conformances are closed, as long as the certificate isn't suspended or under threat of suspension or withdrawal. If a surveillance audit is due, change after it. Your certification number, recertification date and unannounced audit schedule carry over, and your current certificate stays valid until it expires. Once Edition 10 applies (no earlier than January 2, 2027), you can switch after your certificate is issued and before your next audit window opens. Kiwa ASI's ANAB accreditation currently covers specific SQF Edition 9 codes, so ask us about Edition 10 status before you plan an Edition 10 transfer. Send your current certificate and your last recertification and surveillance audit reports.

How long does it take to get a bakery or snack food plant SQF certified?

Plan on at least four to five months from the day your system starts producing records, and longer if you're building it from scratch. SQFI recommends at least 90 days of records before the certification audit, the audit takes at least two days, non-conformances must be closed within 30 days, and SQF gives the certification body up to 45 days after the audit to make its certification decision. The biggest variables are whether a HACCP plan and environmental monitoring program already exist.

How much does SQF certification cost for a bakery or snack food plant?

First-year cost can range from about $6,000 for a small, well-prepared site to $25,000 or more for a larger plant that needs outside help and upgrades. These are estimates only; your audit fee depends on the audit duration your certification body calculates. The first-year total includes the audit fee (roughly $4,500–$9,000+), SQFI registration ($650 for the Food Manufacturing code, capped at $800 for two or more codes), training, any outside help and any facility upgrades.

What score do you need to pass an SQF audit?

70 out of 100 under Edition 9, with no non-conformances left outstanding. Every audit starts at 100 points; each minor non-conformance deducts 1 point, each major 5 and each critical 50. A score of 70–85 (C – Complies) adds a six-month surveillance audit, and a score below 70 or any critical non-conformance fails an initial audit.

Does Kiwa ASI test our baked goods or snacks?

No. Kiwa ASI audits and issues SQF certificates; it doesn't provide laboratory testing. SQF requires external testing to be done by laboratories accredited to ISO/IEC 17025 or an equivalent standard (2.4.4.2). The auditor reviews your results, such as allergen swab results, water tests and shelf-life studies, as part of the audit.

Ready to certify or switch your bakery or snack SQF audit?

Tell us your products, lines and current certification body. We'll check whether we can audit your food sector categories, then confirm your scope, quote your audit and plan announced audits for when your main processes are running.

Accreditation & Trust

ASI Food Safety, LLC is licensed by SQFI and accredited by ANAB to ISO/IEC 17065 for specific SQF Edition 9.0 codes, including Food Manufacturing. Training is offered by ASI Training and Consulting, LLC, a separate company from our accredited certification body, ASI Food Safety, LLC, to safeguard against conflicts of interest, and has no effect on certification decisions.